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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_21258_21338_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21258 - 21338
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATAGCC
5'SS Class:
major
3'SS Sequence:
TCTTTCCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACAAAT
U12 Branch Point Sequence:
GGGGACAAATCC
Flanking Amino Acid:
PSEFPKYFLPCHLPLESRPE
Intron Amino Acid Position:
1569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
61.5
35.5
Major BPS
51.7
0.04
1.2
59.2
35.9
Major PPT
83.2
0.75
0.7
81.4
23.7
Minor 5ss
31.9
-2.1
3.3
40.1
39.8
Minor BPS
34
-1.2
2
37.64
39.7

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030526
4215 - 23356
19142
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217
ENSAPLT00000041661
3181 - 23356
20176