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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_4819_5115_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4819 - 5115
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GTGCCTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
CCCTCCTTCACA
Flanking Amino Acid:
QKLRCGCVRKLPRLSARKGR
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
71.9
0.49
1
65
41.2
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
61.9
0.37
1.8
66.36
46.4

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217
ENSAPLT00000041661
3181 - 23356
20176
ENSAPLT00000030526
4215 - 23356
19142