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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_5280_5960_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5280 - 5960
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTGCAT
U12 Branch Point Sequence:
GTTGCATTATCC
Flanking Amino Acid:
VHEKTQKLSYRCPSTRFFIT
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.8
39.3
Major BPS
57.3
0.18
1.6
71.4
45.1
Major PPT
74.3
0.55
1
66.1
44.1
Minor 5ss
26.5
-2.7
3.2
34.9
41.5
Minor BPS
52.7
0.06
2
68.41
42.8

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217
ENSAPLT00000041661
3181 - 23356
20176
ENSAPLT00000030526
4215 - 23356
19142