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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_6424_7589_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6424 - 7589
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
CTCTCTTTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTCACC
Flanking Amino Acid:
TETTFTVRNVGDLITVFAWE
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
57.5
42.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.2
0.52
0.9
68.7
37.2
Minor 5ss
30.8
-2.2
3.3
32.5
42.6
Minor BPS
61.6
0.35
2
76.59
39.2

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217
ENSAPLT00000041661
3181 - 23356
20176
ENSAPLT00000030526
4215 - 23356
19142