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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_7790_8451_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7790 - 8451
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TCTTCTTTAACA
Flanking Amino Acid:
QKRTLRLKARAKYPYLRVNV
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74
38.4
Major BPS
69.2
0.48
1
61
37.1
Major PPT
83.7
0.76
0.8
80.5
30
Minor 5ss
30
-2.3
2.9
32.9
41.9
Minor BPS
85.8
1.12
0.9
86.93
31.8

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041661
3181 - 23356
20176
ENSAPLT00000030526
4215 - 23356
19142
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217