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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_9758_9855_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9758 - 9855
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CCTGCTCTCACG
Flanking Amino Acid:
EKRALMLPPEIPPDKPPEDY
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
79.1
34.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
75.1
0.56
0.8
69.4
30.9
Minor 5ss
35.3
-1.7
3.8
55.8
48.4
Minor BPS
42.7
-0.7
2.1
46.75
46.6

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030526
4215 - 23356
19142
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217
ENSAPLT00000041661
3181 - 23356
20176