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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015512.1_1144_1300_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1144 - 1300
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGGTCCCTGTCC
Flanking Amino Acid:
GRLLPQRRAGGEYPAAGRAR
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
72.9
0.52
0.8
64.4
36.6
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
41
-0.7
3.6
63.32
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022092
Chromosome:
PEDO01015512.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032932
21 - 1751
1731