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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015512.1_415_678_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
415 - 678
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCCTCACTGACC
Flanking Amino Acid:
KISTIEFGYLDYAQSRFEAY
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
74.7
0.56
0.7
65.8
30.2
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
49.3
-0
2
63.77
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022092
Chromosome:
PEDO01015512.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032932
21 - 1751
1731