Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015513.1_2868_2943_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2868 - 2943

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

CTCCCCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

CTCTGCTCACTC

Flanking Amino Acid:

YRFRARPPTPGYTPLPGDNY

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.7

34.4

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

71.6

0.49

0.7

65.2

23.5

Minor 5ss

31.4

-2.1

3.2

35.2

41.4

Minor BPS

43.7

-0.4

2.1

53.52

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030663

Chromosome:

PEDO01015513.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022825

2791 - 6247

3457