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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015532.1_2124_2214_R

Intron Information:

Intron Rank:
140534
Intron Class:
major
Intron Phase:
Intron Coordinates:
2124 - 2214
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.1
0.7
0.8
73.9
35.8
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
55.5
0.25
1.8
75.31
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022978
Chromosome:
PEDO01015532.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033246
1048 - 4224
3177
ENSAPLT00000031566
34 - 4224
4191
ENSAPLT00000026351
34 - 3176
3143
ENSAPLT00000018183
34 - 3176
3143
ENSAPLT00000036816
34 - 4224
4191