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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015532.1_2600_3195_R

Intron Information:

Intron Rank:
140558
Intron Class:
major
Intron Phase:
Intron Coordinates:
2600 - 3195
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
91.3
0.93
0.6
84.1
30.8
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
61.8
0.45
1.8
78.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022978
Chromosome:
PEDO01015532.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031566
34 - 4224
4191