Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015532.1_744_951_R

Intron Information:

Intron Rank:

140537

Intron Class:

major

Intron Phase:

Intron Coordinates:

744 - 951

Intron Length:

208

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTAAGTCTC

5'SS Class:

major

3'SS Sequence:

TTTTCCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

ACTCTCTCAGCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

69.9

41.1

Major BPS

58.6

0.22

1.5

38.9

Major PPT

0.97

0.6

88.6

20.7

Minor 5ss

40.1

-1.1

50.3

40.1

Minor BPS

48.3

-0.1

1.8

59.27

40.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022978

Chromosome:

PEDO01015532.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018183

34 - 3176

3143