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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015558.1_8232_12365_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8232 - 12365
Intron Length:
4134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTGTGTTTTATA
Flanking Amino Acid:
ITGRMCLKVYAISDPKVEAK
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
64.3
41.8
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
81.3
0.7
0.8
76.5
37.7
Minor 5ss
31.5
-2.1
3.3
42.7
44.4
Minor BPS
49.7
-0
2
66.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029429
Chromosome:
PEDO01015558.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027141
3869 - 15268
11400
ENSAPLT00000017798
6847 - 15268
8422
ENSAPLT00000043313
6739 - 15268
8530
ENSAPLT00000042293
4227 - 15268
11042