Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015624.1_24064_24665_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24064 - 24665

Intron Length:

602

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCTTTTGAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATCCAT

U12 Branch Point Sequence:

TCACCTCTGAGC

Flanking Amino Acid:

GCVHQGRYFKAGETIVSNNC

Intron Amino Acid Position:

1498

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.7

83.9

30.3

Major BPS

57.2

0.18

1.3

68.1

Major PPT

68.1

0.41

1.7

80.6

31.4

Minor 5ss

38.4

-1.3

2.9

48.7

47.5

Minor BPS

44.3

-0.4

1.9

52.35

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028134

Chromosome:

PEDO01015624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027178

20940 - 34782

13843