Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015624.1_24866_25453_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24866 - 25453

Intron Length:

588

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TTTTTTTTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTCAT

U12 Branch Point Sequence:

ATAATGTCATTT

Flanking Amino Acid:

IGGWRTVTFCPLSCPPHSHY

Intron Amino Acid Position:

1431

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.3

75.7

40.1

Major BPS

0.65

1.1

77.4

37.3

Major PPT

93.7

0.98

0.6

88.2

29.1

Minor 5ss

40.2

-1.1

2.8

57.6

39.6

Minor BPS

39.3

-0.7

2.2

55.71

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028134

Chromosome:

PEDO01015624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027178

20940 - 34782

13843