Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015624.1_27544_28196_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27544 - 28196

Intron Length:

653

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

CTTCTTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCCGAG

U12 Branch Point Sequence:

TTTTTCTCGCCT

Flanking Amino Acid:

VEEWRTPSFCAPVCPRHSHY

Intron Amino Acid Position:

1042

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

63.5

42.9

Major BPS

44.4

-0.3

1.6

43.9

40.8

Major PPT

91.7

0.94

0.6

87.6

22.6

Minor 5ss

27.1

-2.6

31.9

42.5

Minor BPS

45.4

-0.2

3.6

82.88

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028134

Chromosome:

PEDO01015624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027178

20940 - 34782

13843