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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015624.1_30556_30918_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30556 - 30918
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
ATCATCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTAAAAT
Flanking Amino Acid:
QGTLQDTEGCAQRCPQNSHF
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.5
40.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.4
0.44
0.9
61.9
34.2
Minor 5ss
42.2
-0.9
3
52.3
45.8
Minor BPS
57.3
0.31
1.8
75.95
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028134
Chromosome:
PEDO01015624.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027178
20940 - 34782
13843