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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015624.1_33946_34705_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33946 - 34705
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
PLRGWTTVLWGVFYLLSVVA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
87.3
0.84
0.6
81
31
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028134
Chromosome:
PEDO01015624.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027178
20940 - 34782
13843