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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015642.1_2305_2885_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2305 - 2885
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATAATA
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCTCTCCTAACG
Flanking Amino Acid:
PPHLWKSTLPDVVSHPSDAN
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
73.6
37
Major BPS
72
0.55
1
71.8
31.4
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
36.7
-1.5
3
41.4
44.8
Minor BPS
57.8
0.11
1.8
65.17
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017538
Chromosome:
PEDO01015642.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040579
1489 - 3825
2337