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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015653.1_4375_6639_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4375 - 6639
Intron Length:
2265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGCTCCATAACC
Flanking Amino Acid:
LLMAICSSDFVVKGSIRNVS
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
73.3
0.53
0.9
71.4
33.6
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
69.3
0.59
1.6
76.51
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020432
Chromosome:
PEDO01015653.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043245
3058 - 9811
6754