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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015653.1_8540_9406_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8540 - 9406
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
ATATCGTTAGTG
Flanking Amino Acid:
GAADYCSWRGSGLSWEPRSR
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
73.4
0.53
1
69.4
41.7
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
48.1
-0.2
2.3
58.59
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020432
Chromosome:
PEDO01015653.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043245
3058 - 9811
6754