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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015665.1_522_3246_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
522 - 3246
Intron Length:
2725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCATTCACTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCCCATTCACT
Flanking Amino Acid:
WKNKIWPEIGAGDMYTLGCS
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.2
0.52
0.9
66.5
34
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
55.9
0.27
2.1
78.66
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021426
Chromosome:
PEDO01015665.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039876
57 - 3317
3261