About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015675.1_1942_2276_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
1942 - 2276

Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACGGCTG

5'SS Class:
major

3'SS Sequence:
CTCCTCCCTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTCT

U12 Branch Point Sequence:
TTTTCCCTGCCC

Flanking Amino Acid:
RDLTLADEACRKADLSVTLG

Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.8
0.68
1.1
64.5
46.9

Major BPS
38.1
-0.7
4.3
71.7
44.6

Major PPT
79.2
0.66
0.7
73.1
25.2

Minor 5ss
33.3
-1.9
3.6
46.8
48.5

Minor BPS
46.1
-0.3
3.6
78.82
36.8

Associated Gene:

Gene:
SIRT6

Ensembl Gene ID:

Chromosome:
PEDO01015675.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 3033
3013