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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015704.1_3421_3830_F

Intron Information:

Intron Rank:
130051
Intron Class:
major
Intron Phase:
Intron Coordinates:
3421 - 3830
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
CTCCCTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
79
0.65
0.8
73.5
31.1
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
55.8
0.16
1.7
63.08
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019984
Chromosome:
PEDO01015704.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044503
21 - 4459
4439