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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015723.1_233_304_F

Intron Information:

Intron Rank:
131127
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
233 - 304
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
GGG|GTGTCACAC
5'SS Class:
weak_major
3'SS Sequence:
GAGCCCTGTTAGG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
ACAGCTTTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.1
0.1
1.2
45.6
38.5
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
32.7
-1
3.1
45
41.3
Minor 5ss
38
-1.4
3
41.9
45
Minor BPS
46.8
-0.3
1.7
45.65
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020441
Chromosome:
PEDO01015723.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040661
21 - 1014
994
ENSAPLT00000020559
21 - 1014
994