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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015749.1_1422_1663_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1422 - 1663
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGT|GCCAGGTGC
5'SS Class:
weak_major
3'SS Sequence:
GCTGTCACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
CCTGCTGTCACT
Flanking Amino Acid:
CHWVAVPLLSLAD
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.8
0.07
1.4
53.2
40.6
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
70.7
0.47
0.9
62.9
38.3
Minor 5ss
24.2
-3
4
33.5
42
Minor BPS
43.8
-0.4
2.4
62.23
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030041
Chromosome:
PEDO01015749.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011178
1411 - 31181
29771