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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015749.1_18113_30740_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18113 - 30740
Intron Length:
12628

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCG|GCACTTTCT
5'SS Class:
major
3'SS Sequence:
TTCTAAACCGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AAATTCTAAACC
Flanking Amino Acid:
SEGQMPNPTSNSEILQTKHK
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.28
1.4
60.8
45.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
49.1
-0
1.7
55.8
38.7
Minor 5ss
32
-2.1
4.1
50.7
45.6
Minor BPS
60.4
0.31
1.6
66.56
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030041
Chromosome:
PEDO01015749.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036476
11153 - 31181
20029