Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015749.1_23374_30717_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

23374 - 30717

Intron Length:

7344

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

AATACAAATCCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

GTTTTGTTATTT

Flanking Amino Acid:

FGTGTKLIVSDKGNSKPENS

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.6

1.05

0.7

81.4

32.7

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

57.6

0.17

1.1

44.2

Minor 5ss

34.5

-1.8

2.9

43.8

43.9

Minor BPS

50.7

0.1

2.2

75.8

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030041

Chromosome:

PEDO01015749.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031637

15340 - 31868

16529