Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015749.1_3887_27369_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3887 - 27369

Intron Length:

23483

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTG|GCAGTCTCA

5'SS Class:

weak_major

3'SS Sequence:

TAAGGAAATATAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTAAAAT

U12 Branch Point Sequence:

ATGTCGCAAACG

Flanking Amino Acid:

DDEGTYYCAYCSVGNLVFGT

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.1

0.22

1.3

48.1

Major BPS

58.2

0.21

1.2

65.3

36.8

Major PPT

50.1

1.1

41.3

41.9

Minor 5ss

32.6

-2

4.2

44.7

45.2

Minor BPS

42.4

-0.7

2.5

54.14

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030041

Chromosome:

PEDO01015749.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047565

3528 - 31181

27654