Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015769.1_3357_3466_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3357 - 3466

Intron Length:

110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTTTAGGTT

5'SS Class:

weak_major

3'SS Sequence:

CTTCCCCACAGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCAAAT

U12 Branch Point Sequence:

AAATGTCCAACA

Flanking Amino Acid:

MFLLLAFADTR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.4

0.1

1.2

56.7

40.1

Major BPS

53.3

0.08

1.1

Major PPT

49.6

-0

1.6

57.5

32.3

Minor 5ss

37.1

-1.5

3.7

52.6

45.9

Minor BPS

42.5

-0.5

2.1

53.07

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019088

Chromosome:

PEDO01015769.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000000794

3354 - 4399

1046