Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015771.1_3279_3502_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3279 - 3502

Intron Length:

224

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTGAGCTCG

5'SS Class:

major

3'SS Sequence:

CCAGAAGGGAGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGTCAT

U12 Branch Point Sequence:

TGGTCATTACCA

Flanking Amino Acid:

WRVAHAGATGFWKGSAVLR

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.9

0.33

1.1

54.1

39.6

Major BPS

69.7

0.49

1.3

71.4

45.1

Major PPT

-0.6

1.6

26.4

35.5

Minor 5ss

41.3

-1

53.9

44.3

Minor BPS

56.7

0.21

1.9

69.37

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024498

Chromosome:

PEDO01015771.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037882

2785 - 3527

743