Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015786.1_289_411_R

Intron Information:

Intron Rank:

145132

Intron Class:

major

Intron Phase:

Intron Coordinates:

289 - 411

Intron Length:

123

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ACG|GCAAGTACC

5'SS Class:

strong_major

3'SS Sequence:

CGGTGCTGCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGGTGAC

U12 Branch Point Sequence:

CGCGCGGTGACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

1.2

85.2

29.9

Major BPS

47.5

-0.1

1.3

38.2

41.7

Major PPT

0.23

53.3

41.5

Minor 5ss

27.2

-2.6

3.7

39.1

38.9

Minor BPS

36.6

-1.2

2.5

38.23

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025502

Chromosome:

PEDO01015786.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047853

21 - 1564

1544