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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015801.1_2069_2263_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2069 - 2263
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
CTG|GTAGCGGTA
5'SS Class:
weak_major
3'SS Sequence:
GCTACTAGTACTG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
GCACCGGTAACT
Flanking Amino Acid:
STTGSGTGTTGTGTTGTGTT
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.2
56.7
42.5
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
38.3
-0.6
3.2
49.9
42.7
Minor 5ss
37.1
-1.5
3.9
51.6
47.5
Minor BPS
44
-0.3
2.5
62.91
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021559
Chromosome:
PEDO01015801.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019629
21 - 3577
3557