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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015801.1_2300_2431_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2300 - 2431
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
CTG|GTACTACTG
5'SS Class:
major
3'SS Sequence:
ACTGGTGCCACTG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCGGTAC
U12 Branch Point Sequence:
GGTGCTGGTACT
Flanking Amino Acid:
GTTGTGTTGTGGAGGGHTGA
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.1
52.1
44.6
Major BPS
43.6
-0.4
1.4
37
42
Major PPT
37
-0.7
3.1
45.6
40.9
Minor 5ss
34.7
-1.7
3.4
44.8
44.9
Minor BPS
39.8
-0.7
2.3
57.91
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021559
Chromosome:
PEDO01015801.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045757
21 - 3577
3557