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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015810.1_1225_1318_R

Intron Information:

Intron Rank:
140945
Intron Class:
major
Intron Phase:
Intron Coordinates:
1225 - 1318
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCGTT
5'SS Class:
major
3'SS Sequence:
TCCCCCCAAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAG
U12 Branch Point Sequence:
CTCCCCCCAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
72.6
38.9
Major BPS
45.5
-0.2
1.7
60.7
45.9
Major PPT
63.6
0.31
0.9
59
30.2
Minor 5ss
37.3
-1.4
3.6
56.2
48
Minor BPS
43
-0.5
2.1
52.85
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023169
Chromosome:
PEDO01015810.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017591
347 - 2595
2249
ENSAPLT00000017409
21 - 2595
2575
ENSAPLT00000032783
21 - 2595
2575
ENSAPLT00000032699
21 - 2595
2575
ENSAPLT00000019149
347 - 2595
2249