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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015810.1_288_361_R

Intron Information:

Intron Rank:
140963
Intron Class:
major
Intron Phase:
Intron Coordinates:
288 - 361
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACACAA
U12 Branch Point Sequence:
ACGGCCACATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
47.2
-0.1
1.1
52.9
34.1
Major PPT
69.3
0.43
0.9
62
34.8
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
40.1
-0.7
2
45.65
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023169
Chromosome:
PEDO01015810.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032783
21 - 2595
2575