Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015828.1_1312_1617_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1312 - 1617

Intron Length:

306

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

AACTTTCTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

ATGTTTCTAACT

Flanking Amino Acid:

VLYKRPCPAEEKPASKRLCT

Intron Amino Acid Position:

479

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

38.2

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

0.65

0.9

69.9

40.6

Minor 5ss

27.2

-2.6

33.9

41.8

Minor BPS

0.46

1.6

78.36

38.1

Associated Gene:

Gene:

TRMT5

Ensembl Gene ID:

ENSAPLG00000008002

Chromosome:

PEDO01015828.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028815

1010 - 4959

3950

ENSAPLT00000020228

1010 - 5455

4446