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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015828.1_3876_4262_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3876 - 4262

Intron Length:

387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAGGTAAA

5'SS Class:

strong_major

3'SS Sequence:

CCCTTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCGTAT

U12 Branch Point Sequence:

AGTCCCTCAACC

Flanking Amino Acid:

DHQLPYKHLIGQVIIDKNPG

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

75.9

35.2

Major BPS

57.7

0.19

1.4

57.4

41.4

Major PPT

85.7

0.8

0.7

83.6

24.7

Minor 5ss

33.8

-1.8

38.1

42.1

Minor BPS

65.4

0.46

1.6

72.18

Associated Gene:

Gene:

TRMT5

Ensembl Gene ID:

ENSAPLG00000008002

Chromosome:

PEDO01015828.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028815

1010 - 4959

3950

ENSAPLT00000020228

1010 - 5455

4446

ENSAPLT00000008299

1487 - 5165

3679