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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015828.1_4913_5450_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4913 - 5450

Intron Length:

538

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGCG

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAA

U12 Branch Point Sequence:

ATGTCTATAAAA

Flanking Amino Acid:

MRTLWRFGCSA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

39.1

Major BPS

65.3

0.38

71.6

30.1

Major PPT

82.1

0.72

0.8

74.5

35.7

Minor 5ss

24.1

-3

3.2

29.4

43.5

Minor BPS

56.7

0.21

1.7

68.05

Associated Gene:

Gene:

TRMT5

Ensembl Gene ID:

ENSAPLG00000008002

Chromosome:

PEDO01015828.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020228

1010 - 5455

4446