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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015828.1_5872_5968_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5872 - 5968
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCGCCGGGA
5'SS Class:
weak_major
3'SS Sequence:
TCCGTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
CTCGCCTCACAT
Flanking Amino Acid:
PPPSSVRERGPPPGSSFGCA
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.4
0.01
1.3
46
39.2
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
71.5
0.48
0.8
64.6
31
Minor 5ss
16.8
-3.8
4
19.9
37.8
Minor BPS
45
-0.3
2
60.81
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030096
Chromosome:
PEDO01015828.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037865
5707 - 6824
1118