Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015828.1_6085_6727_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6085 - 6727

Intron Length:

643

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

CTTGTATTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAA

U12 Branch Point Sequence:

AATGCCTTAAAT

Flanking Amino Acid:

AMASTGVLGFSILLLIVASL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

0.79

0.8

83.7

25.7

Major PPT

84.1

0.77

0.8

81.1

35.5

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

70.5

0.72

1.5

81.26

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030096

Chromosome:

PEDO01015828.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037865

5707 - 6824

1118