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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015848.1_958_1044_F

Intron Information:

Intron Rank:
126115
Intron Class:
major
Intron Phase:
Intron Coordinates:
958 - 1044
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGGC
5'SS Class:
major
3'SS Sequence:
TGCGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
ACCCCCACAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
61.4
37.5
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
81.8
0.72
0.9
76.2
37.8
Minor 5ss
22.7
-3.1
3.5
31.5
43.1
Minor BPS
42.8
-0.4
2
57.35
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017951
Chromosome:
PEDO01015848.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019028
839 - 2112
1274