Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015857.1_6038_6239_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6038 - 6239

Intron Length:

202

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTAGGTGTC

5'SS Class:

major

3'SS Sequence:

GGCTCCCACGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAA

U12 Branch Point Sequence:

CCCCCCTAAACC

Flanking Amino Acid:

QKKLFPDSSTALTPAGPLPG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.26

1.4

43.3

Major BPS

60.4

0.26

1.1

61.5

32.5

Major PPT

61.6

0.26

54.5

35.5

Minor 5ss

37.7

-1.4

3.6

56.1

42.1

Minor BPS

53.9

0.1

1.8

59.26

Associated Gene:

Gene:

SDCBP2

Ensembl Gene ID:

ENSAPLG00000010475

Chromosome:

PEDO01015857.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010901

5441 - 7782

2342