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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015857.1_6402_7359_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6402 - 7359
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CGCTCGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
CGGTGCCAACCC
Flanking Amino Acid:
TGLQLRNIDQGIFVQLVKAN
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
66.8
0.38
0.9
57
38.7
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
35.8
-1.1
2.3
42.9
44.4

Associated Gene:

Gene:
SDCBP2
Ensembl Gene ID:
ENSAPLG00000010475
Chromosome:
PEDO01015857.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010901
5441 - 7782
2342