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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015861.1_11658_11794_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11658 - 11794
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
CTTTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTCACCCCAACT
Flanking Amino Acid:
TTEMRITYVTEGERSQSHSA
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
43
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
81.2
0.7
0.7
73.4
31.5
Minor 5ss
30
-2.3
3.5
39.7
45.8
Minor BPS
55.3
0.24
2
78.16
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014948
Chromosome:
PEDO01015861.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015567
11604 - 15851
4248