Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015861.1_3105_3542_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3105 - 3542

Intron Length:

438

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGAGCC

5'SS Class:

major

3'SS Sequence:

TCCACCCCGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAC

U12 Branch Point Sequence:

CCTGAATTACCT

Flanking Amino Acid:

KELSERIRALEGREAPEQAL

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

Major BPS

67.4

0.43

1.3

78.4

35.2

Major PPT

63.2

0.3

Minor 5ss

25.8

-2.8

3.1

25.9

36.5

Minor BPS

44.3

-0.3

2.1

61.42

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020802

Chromosome:

PEDO01015861.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044114

2053 - 4772

2720

ENSAPLT00000048422

1092 - 5509

4418