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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015861.1_8876_9006_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8876 - 9006
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
CTCGTCCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TGGTTTTGAGAC
Flanking Amino Acid:
RYYKELQDVAALICHNLPNK
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
78.4
0.64
0.8
69
37.1
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
45
-0.4
1.7
52.75
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014932
Chromosome:
PEDO01015861.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015554
5963 - 10844
4882