Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015861.1_9731_10095_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9731 - 10095

Intron Length:

365

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAAAT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCTCTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTTTCCTTTCTT

Flanking Amino Acid:

FWMNGKPLSVSYWDTWSQNS

Intron Amino Acid Position:

281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

83.1

28.4

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

85.1

0.79

0.7

77.1

31.6

Minor 5ss

34.5

-1.8

3.1

48.5

47.2

Minor BPS

48.5

-0

3.6

87.87

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014932

Chromosome:

PEDO01015861.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015554

5963 - 10844

4882