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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015864.1_2392_2467_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2392 - 2467
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCACCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
ACCCCCTGGACA
Flanking Amino Acid:
LDWQMVFLQKYPPPLIPPRG
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
50
0
1.2
61.8
35.9
Major PPT
73.2
0.52
0.8
65.9
28.9
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
53.2
0.09
1.5
58.98
40.5

Associated Gene:

Gene:
GRK2
Ensembl Gene ID:
ENSAPLG00000023035
Chromosome:
PEDO01015864.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042268
304 - 3039
2736