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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015895.1_2434_3062_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2434 - 3062
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGACAAT
U12 Branch Point Sequence:
CTGTCCCCACAG
Flanking Amino Acid:
DALSLLSTFGSLAAVARAPR
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.1
40.8
Major BPS
43
-0.4
1.5
44.8
44.8
Major PPT
71.9
0.49
0.8
64.7
31
Minor 5ss
22.7
-3.1
3.2
19.9
37.9
Minor BPS
40.1
-0.8
2.1
45.45
46.4

Associated Gene:

Gene:
ERCC1
Ensembl Gene ID:
ENSAPLG00000025982
Chromosome:
PEDO01015895.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043895
21 - 3610
3590